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NutMEG 2.0 documentation
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Getting started

  • Installation
  • Core framework
  • Bioenergetics 101
  • Tutorials
    • Creating a reactor
    • Creating an organism
    • Creating an ecosystem
    • Base Rate Models
    • Rate forcing factors
    • Rate Aggregators
    • Presets
  • Examples
    • Simple microbial competition
    • Monod kinetics example

Paperwork

  • Citing NutMEG
  • NutMEG publications

API

  • NutMEG
    • NutMEG.core
      • NutMEG.core.base_organism
        • NutMEG.core.base_organism.base_organism
        • NutMEG.core.base_organism.grower
        • NutMEG.core.base_organism.maintainer
        • NutMEG.core.base_organism.metaboliser
      • NutMEG.core.ecosystem
      • NutMEG.core.reactor
        • NutMEG.core.reactor.reaction
        • NutMEG.core.reactor.reactor
        • NutMEG.core.reactor.reagent
      • NutMEG.core.resident
        • NutMEG.core.resident.organism_population
        • NutMEG.core.resident.resident
    • NutMEG.models
      • NutMEG.models.aggregators
        • NutMEG.models.aggregators.Multiplicative
        • NutMEG.models.aggregators.leibig_minimum
        • NutMEG.models.aggregators.rate_aggregator
      • NutMEG.models.ecosystem
        • NutMEG.models.ecosystem.growth_simulation
      • NutMEG.models.organism
        • NutMEG.models.organism.base_rate_models
          • NutMEG.models.organism.base_rate_models.arrhenius
          • NutMEG.models.organism.base_rate_models.base_rate_model
          • NutMEG.models.organism.base_rate_models.constant
          • NutMEG.models.organism.base_rate_models.first_order_chemical
          • NutMEG.models.organism.base_rate_models.q10
        • NutMEG.models.organism.forcing_factors
          • NutMEG.models.organism.forcing_factors.bioenergetic
          • NutMEG.models.organism.forcing_factors.biological_performance
          • NutMEG.models.organism.forcing_factors.combo_add
          • NutMEG.models.organism.forcing_factors.forcing_factor
          • NutMEG.models.organism.forcing_factors.inhibition_chemical
          • NutMEG.models.organism.forcing_factors.inhibition_platt_jassby
          • NutMEG.models.organism.forcing_factors.lower_limit
          • NutMEG.models.organism.forcing_factors.monod
          • NutMEG.models.organism.forcing_factors.upper_limit
        • NutMEG.models.organism.growth_models
          • NutMEG.models.organism.growth_models.bioenergetic_growth_model
          • NutMEG.models.organism.growth_models.classic_growth_model
          • NutMEG.models.organism.growth_models.growth_model
        • NutMEG.models.organism.maintenance_models
          • NutMEG.models.organism.maintenance_models.constant
          • NutMEG.models.organism.maintenance_models.higgins_cockell_2020
          • NutMEG.models.organism.maintenance_models.lever_2015
          • NutMEG.models.organism.maintenance_models.maintenance_model
          • NutMEG.models.organism.maintenance_models.pH_pumping
          • NutMEG.models.organism.maintenance_models.tijhuis_1993
    • NutMEG.presets
      • NutMEG.presets.enceladus
      • NutMEG.presets.organisms
        • NutMEG.presets.organisms.kinetically_limited_organism
    • NutMEG.utils
      • NutMEG.utils.math
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Tutorials

This page contains tutorials to get you started with NutMEG.

  • Creating a reactor
  • Creating an organism
  • Creating an ecosystem
  • Base Rate Models
  • Rate forcing factors
  • Rate Aggregators
  • Presets
Next
Creating a reactor
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Bioenergetics 101
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